Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs17597112 chr8:41305587 A/G 1.39E-7 181 13 20 2.7 KM Plot
ESCA rs17598654 chr8:41362568 A/C 1.16E-7 184 13 19.27 2.7 KM Plot
ESCA rs17598698 chr8:41363742 G/C 1.44E-7 183 13.02 19.27 2.7 KM Plot
ESCA rs17656952 chr8:41355096 C/T 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs17657160 chr8:41364486 G/A 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs17735769 chr5:172898697 C/G 2.0E-5 184 13.18 18.42 3.33 KM Plot
ESCA rs17751535 chr7:3609495 C/T 7.87E-5 184 13.22 20.32 7.65 KM Plot
ESCA rs184220799 chr2:99687846 T/TA 8.23E-10 178 13.02 21.67 1.4 KM Plot
ESCA rs185385579 chr6:145685776 T/TA 5.48E-5 179 13.43 13.35 7.9 KM Plot
ESCA rs185979625 chr1:247196065 C/T 5.29E-7 182 13.03 17.95 3.87 KM Plot
ESCA rs1868292 chr2:223939331 G/T 4.37E-5 183 6.85 13.73 13.35 KM Plot
ESCA rs1883365 chr6:146076749 C/T 9.05E-5 183 10.1 13.4 13.57 KM Plot
ESCA rs190545575 chr16:1523535 T/C 8.3E-9 180 13.38 13.42 4 KM Plot
ESCA rs197383 chr1:112293032 C/T 7.68E-6 184 7.32 10.05 13.5 KM Plot
ESCA rs200536527 chr6:145689120 G/GTA 8.48E-5 177 13.5 13.1 10.13 KM Plot